response: (stroke3=='1') 
covariates: strage3 sex 
SNP: CELSR2_MG_438 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6299  -0.4764  -0.3548  -0.1737   2.8452  

Coefficients:
                                         Estimate Std. Error z value Pr(>|z|)  
(Intercept)                            -6.138e+00  2.661e+00  -2.306   0.0211 *
allele[notmissing]                     -4.405e-02  3.248e-01  -0.136   0.8921  
z[notmissing, ]1                        3.751e-02  3.438e-02   1.091   0.2753  
z[notmissing, ]2                        1.546e+00  1.143e+00   1.353   0.1761  
as.factor(ruaco[notmissing])FIN-EAS_03 -8.076e-01  1.089e+00  -0.741   0.4585  
as.factor(ruaco[notmissing])FIN-EAS_24 -9.936e-01  7.620e-01  -1.304   0.1923  
as.factor(ruaco[notmissing])FIN-WES_03 -5.054e-01  1.094e+00  -0.462   0.6440  
as.factor(ruaco[notmissing])FIN-WES_24 -1.384e+00  1.047e+00  -1.321   0.1864  
as.factor(ruaco[notmissing])FRA-LIL_21 -1.507e+01  1.768e+03  -0.009   0.9932  
as.factor(ruaco[notmissing])FRA-STR_21 -1.511e+01  1.613e+03  -0.009   0.9925  
as.factor(ruaco[notmissing])FRA-TOU_21 -1.522e+01  1.977e+03  -0.008   0.9939  
as.factor(ruaco[notmissing])SWE-NSW_02 -1.528e-01  1.093e+00  -0.140   0.8888  
as.factor(ruaco[notmissing])SWE-NSW_03 -5.652e-03  1.158e+00  -0.005   0.9961  
as.factor(ruaco[notmissing])UNK-BEL_21  2.250e-01  1.137e+00   0.198   0.8431  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 222.00  on 424  degrees of freedom
Residual deviance: 205.67  on 411  degrees of freedom
AIC: 233.67

Number of Fisher Scoring iterations: 16

Updated on 2008-06-04