response: (stroke3=='1') 
covariates: strage3 sex 
SNP: MIA3_MG_454 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.9527  -0.4441  -0.3254  -0.1658   3.0138  

Coefficients:
                                         Estimate Std. Error z value Pr(>|z|)  
(Intercept)                              -5.75118    2.78953  -2.062   0.0392 *
allele[notmissing]                        0.77485    0.31882   2.430   0.0151 *
z[notmissing, ]1                          0.04040    0.03626   1.114   0.2652  
z[notmissing, ]2                          1.42630    1.17479   1.214   0.2247  
as.factor(ruaco[notmissing])FIN-EAS_03   -0.72532    1.10636  -0.656   0.5121  
as.factor(ruaco[notmissing])FIN-EAS_24   -1.76067    1.04713  -1.681   0.0927 .
as.factor(ruaco[notmissing])FIN-WES_03   -0.51185    1.09511  -0.467   0.6402  
as.factor(ruaco[notmissing])FIN-WES_24   -1.24235    1.05300  -1.180   0.2381  
as.factor(ruaco[notmissing])FRA-LIL_21  -14.77474 1767.47299  -0.008   0.9933  
as.factor(ruaco[notmissing])FRA-STR_21  -15.08775 1595.54834  -0.009   0.9925  
as.factor(ruaco[notmissing])FRA-TOU_21  -15.15620 1957.98123  -0.008   0.9938  
as.factor(ruaco[notmissing])SWE-NSW_02   -0.44026    1.11347  -0.395   0.6925  
as.factor(ruaco[notmissing])SWE-NSW_03   -0.19925    1.20313  -0.166   0.8685  
as.factor(ruaco[notmissing])UNK-BEL_21   -0.03769    1.16312  -0.032   0.9742  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 216.00  on 418  degrees of freedom
Residual deviance: 192.93  on 405  degrees of freedom
AIC: 220.93

Number of Fisher Scoring iterations: 16

Updated on 2008-06-04