response: (stroke3=='1') 
covariates: strage3 sex 
SNP: MTHFD1L_MG_445 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6396  -0.4772  -0.3513  -0.1780   2.8513  

Coefficients:
                                         Estimate Std. Error z value Pr(>|z|)  
(Intercept)                              -6.18159    2.64267  -2.339   0.0193 *
allele[notmissing]                       -0.05152    0.31607  -0.163   0.8705  
z[notmissing, ]1                          0.03720    0.03441   1.081   0.2796  
z[notmissing, ]2                          1.55273    1.13978   1.362   0.1731  
as.factor(ruaco[notmissing])FIN-EAS_03   -0.80471    1.08800  -0.740   0.4595  
as.factor(ruaco[notmissing])FIN-EAS_24   -0.98617    0.76134  -1.295   0.1952  
as.factor(ruaco[notmissing])FIN-WES_03   -0.48858    1.09212  -0.447   0.6546  
as.factor(ruaco[notmissing])FIN-WES_24   -1.37778    1.04527  -1.318   0.1875  
as.factor(ruaco[notmissing])FRA-LIL_21  -15.07511 1766.74507  -0.009   0.9932  
as.factor(ruaco[notmissing])FRA-STR_21  -15.10513 1612.66837  -0.009   0.9925  
as.factor(ruaco[notmissing])FRA-TOU_21  -15.23597 1976.82273  -0.008   0.9939  
as.factor(ruaco[notmissing])SWE-NSW_02   -0.16017    1.09329  -0.147   0.8835  
as.factor(ruaco[notmissing])SWE-NSW_03    0.01077    1.15167   0.009   0.9925  
as.factor(ruaco[notmissing])UNK-BEL_21    0.24525    1.13932   0.215   0.8296  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 222.00  on 424  degrees of freedom
Residual deviance: 205.66  on 411  degrees of freedom
AIC: 233.66

Number of Fisher Scoring iterations: 16

Updated on 2008-06-04