response: (stroke3=='1') 
covariates: strage3 sex 
SNP: SMAD3_MG_452 

Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing, 
    ] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"))

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6816  -0.4791  -0.3284  -0.1719   2.7590  

Coefficients:
                                         Estimate Std. Error z value Pr(>|z|)  
(Intercept)                              -6.43790    2.71933  -2.367   0.0179 *
allele[notmissing]                       -0.51479    0.38259  -1.346   0.1785  
z[notmissing, ]1                          0.03681    0.03516   1.047   0.2952  
z[notmissing, ]2                          1.52025    1.15485   1.316   0.1880  
as.factor(ruaco[notmissing])FIN-EAS_03   -0.76241    1.10126  -0.692   0.4887  
as.factor(ruaco[notmissing])FIN-EAS_24   -1.63311    1.04027  -1.570   0.1164  
as.factor(ruaco[notmissing])FIN-WES_03   -0.41537    1.09500  -0.379   0.7044  
as.factor(ruaco[notmissing])FIN-WES_24   -1.22474    1.05234  -1.164   0.2445  
as.factor(ruaco[notmissing])FRA-LIL_21  -15.09499 1755.79661  -0.009   0.9931  
as.factor(ruaco[notmissing])FRA-STR_21  -15.20766 1606.97247  -0.009   0.9924  
as.factor(ruaco[notmissing])FRA-TOU_21  -15.28620 1970.83604  -0.008   0.9938  
as.factor(ruaco[notmissing])SWE-NSW_02   -0.06059    1.10225  -0.055   0.9562  
as.factor(ruaco[notmissing])SWE-NSW_03    0.16633    1.16788   0.142   0.8867  
as.factor(ruaco[notmissing])UNK-BEL_21    0.36627    1.14530   0.320   0.7491  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 216.30  on 420  degrees of freedom
Residual deviance: 196.75  on 407  degrees of freedom
AIC: 224.75

Number of Fisher Scoring iterations: 16

Updated on 2008-06-04