response: (stroke3=='1')
covariates: strage3 sex nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: 10Q11_21_MG_458
Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing,
] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"))
Deviance Residuals:
Min 1Q Median 3Q Max
-1.00204 -0.44548 -0.29205 -0.08338 3.05910
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) 0.73470 4.13243 0.178 0.85889
allele[notmissing] 0.12682 0.43520 0.291 0.77074
z[notmissing, ]1 0.01499 0.03793 0.395 0.69260
z[notmissing, ]2 1.42890 1.21416 1.177 0.23925
z[notmissing, ]3 -0.05426 0.17159 -0.316 0.75183
z[notmissing, ]4 -0.32449 0.78706 -0.412 0.68013
z[notmissing, ]5 -0.20882 0.06765 -3.087 0.00202
z[notmissing, ]6 0.01174 0.01577 0.744 0.45673
z[notmissing, ]7 -0.75803 0.53840 -1.408 0.15915
z[notmissing, ]8 -0.23426 0.84202 -0.278 0.78085
as.factor(ruaco[notmissing])FIN-EAS_03 -1.24584 1.20582 -1.033 0.30151
as.factor(ruaco[notmissing])FIN-EAS_24 -17.29022 1492.60645 -0.012 0.99076
as.factor(ruaco[notmissing])FIN-WES_03 -0.54706 1.19546 -0.458 0.64723
as.factor(ruaco[notmissing])FIN-WES_24 -1.44348 1.13230 -1.275 0.20237
as.factor(ruaco[notmissing])FRA-LIL_21 -17.89848 5304.03573 -0.003 0.99731
as.factor(ruaco[notmissing])FRA-STR_21 -17.35881 4748.02507 -0.004 0.99708
as.factor(ruaco[notmissing])FRA-TOU_21 -17.81387 5262.40713 -0.003 0.99730
as.factor(ruaco[notmissing])SWE-NSW_02 -0.47605 1.21521 -0.392 0.69525
as.factor(ruaco[notmissing])SWE-NSW_03 -0.72644 1.32544 -0.548 0.58364
as.factor(ruaco[notmissing])UNK-BEL_21 -0.27869 1.20088 -0.232 0.81648
(Intercept)
allele[notmissing]
z[notmissing, ]1
z[notmissing, ]2
z[notmissing, ]3
z[notmissing, ]4
z[notmissing, ]5 **
z[notmissing, ]6
z[notmissing, ]7
z[notmissing, ]8
as.factor(ruaco[notmissing])FIN-EAS_03
as.factor(ruaco[notmissing])FIN-EAS_24
as.factor(ruaco[notmissing])FIN-WES_03
as.factor(ruaco[notmissing])FIN-WES_24
as.factor(ruaco[notmissing])FRA-LIL_21
as.factor(ruaco[notmissing])FRA-STR_21
as.factor(ruaco[notmissing])FRA-TOU_21
as.factor(ruaco[notmissing])SWE-NSW_02
as.factor(ruaco[notmissing])SWE-NSW_03
as.factor(ruaco[notmissing])UNK-BEL_21
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 209.09 on 406 degrees of freedom
Residual deviance: 176.40 on 387 degrees of freedom
(12 observations deleted due to missingness)
AIC: 216.40
Number of Fisher Scoring iterations: 18
Updated on 2008-06-04