response: (stroke3=='1')
covariates: strage3 sex nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: MIA3_MG_454
Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing,
] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"))
Deviance Residuals:
Min 1Q Median 3Q Max
-0.91038 -0.43674 -0.27931 -0.07502 2.86362
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) 1.00058 4.14704 0.241 0.80934
allele[notmissing] 0.60135 0.34791 1.728 0.08391
z[notmissing, ]1 0.01778 0.03868 0.460 0.64577
z[notmissing, ]2 1.39525 1.23926 1.126 0.26022
z[notmissing, ]3 -0.05659 0.17706 -0.320 0.74925
z[notmissing, ]4 -0.42288 0.79600 -0.531 0.59524
z[notmissing, ]5 -0.20640 0.06893 -2.994 0.00275
z[notmissing, ]6 0.01290 0.01542 0.837 0.40279
z[notmissing, ]7 -0.75897 0.54359 -1.396 0.16265
z[notmissing, ]8 -0.45411 0.87459 -0.519 0.60360
as.factor(ruaco[notmissing])FIN-EAS_03 -0.99076 1.21996 -0.812 0.41672
as.factor(ruaco[notmissing])FIN-EAS_24 -17.30017 1480.03675 -0.012 0.99067
as.factor(ruaco[notmissing])FIN-WES_03 -0.53867 1.19630 -0.450 0.65251
as.factor(ruaco[notmissing])FIN-WES_24 -1.44058 1.14134 -1.262 0.20688
as.factor(ruaco[notmissing])FRA-LIL_21 -17.63951 5307.49891 -0.003 0.99735
as.factor(ruaco[notmissing])FRA-STR_21 -17.36341 4750.30811 -0.004 0.99708
as.factor(ruaco[notmissing])FRA-TOU_21 -17.98117 5026.04318 -0.004 0.99715
as.factor(ruaco[notmissing])SWE-NSW_02 -0.70933 1.20548 -0.588 0.55625
as.factor(ruaco[notmissing])SWE-NSW_03 -1.01075 1.45593 -0.694 0.48754
as.factor(ruaco[notmissing])UNK-BEL_21 -0.39602 1.20960 -0.327 0.74337
(Intercept)
allele[notmissing] .
z[notmissing, ]1
z[notmissing, ]2
z[notmissing, ]3
z[notmissing, ]4
z[notmissing, ]5 **
z[notmissing, ]6
z[notmissing, ]7
z[notmissing, ]8
as.factor(ruaco[notmissing])FIN-EAS_03
as.factor(ruaco[notmissing])FIN-EAS_24
as.factor(ruaco[notmissing])FIN-WES_03
as.factor(ruaco[notmissing])FIN-WES_24
as.factor(ruaco[notmissing])FRA-LIL_21
as.factor(ruaco[notmissing])FRA-STR_21
as.factor(ruaco[notmissing])FRA-TOU_21
as.factor(ruaco[notmissing])SWE-NSW_02
as.factor(ruaco[notmissing])SWE-NSW_03
as.factor(ruaco[notmissing])UNK-BEL_21
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 209.09 on 406 degrees of freedom
Residual deviance: 173.51 on 387 degrees of freedom
(12 observations deleted due to missingness)
AIC: 213.51
Number of Fisher Scoring iterations: 18
Updated on 2008-06-04