response: (stroke3=='1')
covariates: strage3 sex nonhdl hdla bmi bpm dsmoker hisdiab1
SNP: SMAD3_MG_452
Call:
glm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing,
] + as.factor(ruaco[notmissing]), family = binomial(link = "logit"))
Deviance Residuals:
Min 1Q Median 3Q Max
-1.05208 -0.43220 -0.25791 -0.07252 2.92124
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) 1.10400 4.14673 0.266 0.79006
allele[notmissing] -0.72166 0.42035 -1.717 0.08602
z[notmissing, ]1 0.01132 0.03795 0.298 0.76554
z[notmissing, ]2 1.45867 1.20893 1.207 0.22759
z[notmissing, ]3 -0.04820 0.17285 -0.279 0.78034
z[notmissing, ]4 -0.46463 0.78036 -0.595 0.55157
z[notmissing, ]5 -0.21448 0.06762 -3.172 0.00151
z[notmissing, ]6 0.01004 0.01597 0.629 0.52941
z[notmissing, ]7 -0.82377 0.54561 -1.510 0.13109
z[notmissing, ]8 -0.36875 0.87041 -0.424 0.67182
as.factor(ruaco[notmissing])FIN-EAS_03 -1.23499 1.21634 -1.015 0.30995
as.factor(ruaco[notmissing])FIN-EAS_24 -17.30240 1475.71227 -0.012 0.99065
as.factor(ruaco[notmissing])FIN-WES_03 -0.51289 1.20161 -0.427 0.66950
as.factor(ruaco[notmissing])FIN-WES_24 -1.32729 1.14047 -1.164 0.24450
as.factor(ruaco[notmissing])FRA-LIL_21 -18.00554 5292.72476 -0.003 0.99729
as.factor(ruaco[notmissing])FRA-STR_21 -17.60685 4682.40246 -0.004 0.99700
as.factor(ruaco[notmissing])FRA-TOU_21 -17.91634 5302.07135 -0.003 0.99730
as.factor(ruaco[notmissing])SWE-NSW_02 -0.50307 1.19825 -0.420 0.67460
as.factor(ruaco[notmissing])SWE-NSW_03 -0.60188 1.37008 -0.439 0.66044
as.factor(ruaco[notmissing])UNK-BEL_21 -0.19917 1.23596 -0.161 0.87198
(Intercept)
allele[notmissing] .
z[notmissing, ]1
z[notmissing, ]2
z[notmissing, ]3
z[notmissing, ]4
z[notmissing, ]5 **
z[notmissing, ]6
z[notmissing, ]7
z[notmissing, ]8
as.factor(ruaco[notmissing])FIN-EAS_03
as.factor(ruaco[notmissing])FIN-EAS_24
as.factor(ruaco[notmissing])FIN-WES_03
as.factor(ruaco[notmissing])FIN-WES_24
as.factor(ruaco[notmissing])FRA-LIL_21
as.factor(ruaco[notmissing])FRA-STR_21
as.factor(ruaco[notmissing])FRA-TOU_21
as.factor(ruaco[notmissing])SWE-NSW_02
as.factor(ruaco[notmissing])SWE-NSW_03
as.factor(ruaco[notmissing])UNK-BEL_21
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 209.39 on 408 degrees of freedom
Residual deviance: 173.36 on 389 degrees of freedom
(12 observations deleted due to missingness)
AIC: 213.36
Number of Fisher Scoring iterations: 18
Updated on 2008-06-04