response: systm
covariates: age1 sex
SNP: SMAD3_MG_452
Call:
lm(formula = response[notmissing] ~ allele[notmissing] + z[notmissing,
] + as.factor(ruaco[notmissing]))
Residuals:
Min 1Q Median 3Q Max
-56.127 -12.647 -2.352 12.360 89.399
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 104.26527 4.54662 22.932 < 2e-16
allele[notmissing] -0.90313 0.73648 -1.226 0.220254
z[notmissing, ]1 0.59012 0.06363 9.275 < 2e-16
z[notmissing, ]2 -0.92945 1.57457 -0.590 0.555070
as.factor(ruaco[notmissing])FIN-EAS_03 7.87926 1.79877 4.380 1.25e-05
as.factor(ruaco[notmissing])FIN-EAS_24 5.17697 1.62839 3.179 0.001501
as.factor(ruaco[notmissing])FIN-WES_03 2.68307 1.91722 1.399 0.161843
as.factor(ruaco[notmissing])FIN-WES_24 2.82990 1.89983 1.490 0.136511
as.factor(ruaco[notmissing])FRA-LIL_21 1.26747 3.44580 0.368 0.713042
as.factor(ruaco[notmissing])FRA-STR_21 -3.39362 2.76950 -1.225 0.220597
as.factor(ruaco[notmissing])FRA-TOU_21 -10.72368 2.87816 -3.726 0.000200
as.factor(ruaco[notmissing])SWE-NSW_02 -2.87811 2.50390 -1.149 0.250518
as.factor(ruaco[notmissing])SWE-NSW_03 -1.08481 2.54027 -0.427 0.669397
as.factor(ruaco[notmissing])UNK-BEL_21 -4.99081 1.87750 -2.658 0.007923
(Intercept) ***
allele[notmissing]
z[notmissing, ]1 ***
z[notmissing, ]2
as.factor(ruaco[notmissing])FIN-EAS_03 ***
as.factor(ruaco[notmissing])FIN-EAS_24 **
as.factor(ruaco[notmissing])FIN-WES_03
as.factor(ruaco[notmissing])FIN-WES_24
as.factor(ruaco[notmissing])FRA-LIL_21
as.factor(ruaco[notmissing])FRA-STR_21
as.factor(ruaco[notmissing])FRA-TOU_21 ***
as.factor(ruaco[notmissing])SWE-NSW_02
as.factor(ruaco[notmissing])SWE-NSW_03
as.factor(ruaco[notmissing])UNK-BEL_21 **
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 18.66 on 1856 degrees of freedom
Multiple R-squared: 0.09358, Adjusted R-squared: 0.08723
F-statistic: 14.74 on 13 and 1856 DF, p-value: < 2.2e-16
Updated on 2008-06-04