response: basestr1==1
covariates: age1 sex ruaco
SNP: rs1333049
Call:
glm(formula = basestr1 ~ rs1333049 * as.factor(ruaco) + age1 +
sex, family = binomial(link = "logit"), data = ccset, offset = log(1/prob))
Deviance Residuals:
Min 1Q Median 3Q Max
-1.1288 -0.6790 -0.5836 -0.2007 3.0717
Coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) -9.142920 0.468129 -19.531 < 2e-16 ***
rs1333049 0.227911 0.111054 2.052 0.040144 *
as.factor(ruaco)FIN-EAS_03 0.529776 0.203965 2.597 0.009394 **
as.factor(ruaco)FIN-EAS_24 0.464541 0.154451 3.008 0.002632 **
as.factor(ruaco)FIN-WES_03 0.440990 0.207782 2.122 0.033807 *
as.factor(ruaco)FIN-WES_24 -0.128329 0.189786 -0.676 0.498928
as.factor(ruaco)FRA-LIL_21 -3.171093 1.022048 -3.103 0.001918 **
as.factor(ruaco)FRA-STR_21 -2.768852 0.725126 -3.818 0.000134 ***
as.factor(ruaco)FRA-TOU_21 -3.273673 1.014604 -3.227 0.001253 **
as.factor(ruaco)SWE-NSW_02 0.021129 0.311704 0.068 0.945957
as.factor(ruaco)SWE-NSW_03 -0.034404 0.235376 -0.146 0.883791
as.factor(ruaco)UNK-BEL_21 -3.456873 0.919798 -3.758 0.000171 ***
age1 0.087220 0.006714 12.991 < 2e-16 ***
sex 0.454998 0.143614 3.168 0.001534 **
rs1333049:as.factor(ruaco)FIN-EAS_03 -0.010984 0.255467 -0.043 0.965705
rs1333049:as.factor(ruaco)FIN-EAS_24 -0.052984 0.204419 -0.259 0.795486
rs1333049:as.factor(ruaco)FIN-WES_03 0.242955 0.265753 0.914 0.360605
rs1333049:as.factor(ruaco)FIN-WES_24 -0.324944 0.260721 -1.246 0.212643
rs1333049:as.factor(ruaco)FRA-LIL_21 0.084121 1.591995 0.053 0.957859
rs1333049:as.factor(ruaco)FRA-STR_21 -0.035308 1.035476 -0.034 0.972799
rs1333049:as.factor(ruaco)FRA-TOU_21 -0.318997 1.570362 -0.203 0.839029
rs1333049:as.factor(ruaco)SWE-NSW_02 0.176690 0.438269 0.403 0.686835
rs1333049:as.factor(ruaco)SWE-NSW_03 -0.060953 0.307285 -0.198 0.842764
rs1333049:as.factor(ruaco)UNK-BEL_21 -1.385862 1.161860 -1.193 0.232949
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
(Dispersion parameter for binomial family taken to be 1)
Null deviance: 2887.9 on 2747 degrees of freedom
Residual deviance: 2438.0 on 2724 degrees of freedom
(80 observations deleted due to missingness)
AIC: 2486.0
Number of Fisher Scoring iterations: 7
Updated on 2008-02-27